Lecture 02 in Theoretical DNA and Protein analysis, 5p

TITLE:Finding sequences in a database (EW)

Date etc.

Content

Papers to read
  • DATE: Tue 01 Oct 1996 15:00
  • ROOM: 4V
  • LECTURER: Erik Wallin
  • Background,
  • Different methods to search for two matching sequences.
  • blast, fasta, dynamic programming
  • Alignments (local, global)
  1. Willian R. Pearson "Comparison of methods for searching protein sequence databases" Protein Science, 1995 4:1145-1160
  2. Stephen Altschul et al. "Basic Local Alignment Search Tool" J.Mol.Bio.215403-410
  3. William R. Pearson "Rapid and Sensitive Sequence Comparisons" Meth. in Enzymol.1990183:63-88
  4. Smith and Waterman "Identification of Common Molecular Subsequences" J.Mol.Biol. 1980195-197