Lecture 09 in Theoretical DNA and Protein analysis, 5p

TITLE: Threading: 1 (AE)

Date etc.

Content

Papers to read
  • DATE: Tue 15 Oct 1996 15:00
  • ROOM: 4V
  • LECTURER: Arne Elofsson
      • SEQUENCE METHODS
    • Sequence matrixes
    • Sequence profiles (and other multiple sequence methods)
    • Hidden markov Models STRUCTURAL METHODS
    • 3d-1d profiles (Bowie et al.)
    • Threader (Jones)
    • Frozen approximation
    • Distance based methods (Sippl, Godzik)

    Luthy R; Xenarios I; Bucher P. "Improving the sensitivity of the sequence profile method." Protein Science, 1994 Jan, 3(1):139-46.

    Godzik A; Kolinski A; Skolnick J. "Topology fingerprint approach to the inverse protein folding problem." Journal of Molecular Biology, 1992 Sep 5, 227-238

    Jones DT; Taylor WR; Thornton JM. "A new approach to protein fold recognition." Nature, 1992 Jul 2, 358(6381):86-9.

    Bowie JU; Luthy R; Eisenberg D. "A method to identify protein sequences that fold into a known three-dimensional structure." Science, 1991 Jul 12, 253(5016):164-70.