Lecture 12 in Theoretical DNA and Protein analysis, 5p


TITLE: Homology Modeling. (AE)

Date etc.

Content

Papers to read

PAPER: None
  • DATE: Wed 23 Oct 1996 15:00
  • ROOM: 4V
  • LECTURER: Arne Elofsson
    • Methods to organise sidechains
    • Two different approaches. ICM and Modeller
    • Abagyan R; Totrov M. "Biased probability Monte Carlo conformational searches and electrostatic calculations for peptides and proteins." Journal of Molecular Biology, 1994 Jan 21, 235(3):983-1002.
    • Timothy Cardozo, Maxim Totrov and Ruben Abagyan "Homology Modeling by the ICM method"Proteins, structure function and genetics199523:3 403-414
    • A, Sali, Blundell, T.L. "Comparative protein modelling by satisfaction of spatial restraints " J. Mol. Biol, 1003 234:779-815
    • Patrice Koehl, Marc Delarue "A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling" Nature, Structural biology1995, 2:163-171