Lecture 18 in Theoretical DNA and Protein analysis, 5p


TITLE: Attempts for protein folding simulations. (AE)

Date etc.

Content

Papers to read

  • DATE: Wed 30 Oct 1996 15:00
  • ROOM: 4V
  • LECTURER: Arne Elofsson
    • Linus
    • Skolnick
    • Dill
    • Abagyan/Moult
    • Srinivasan R; Rose GD. "LINUS: a hierarchic procedure to predict the fold of a protein." Proteins, 1995 Jun, 22(2):81-99.
    • Sun S, Thomas PD, Dill KA. "A simple protein folding algorithm using a binary code and secondary structure constraints." Protein Engineering, 1995 Aug, 8(8):769-78.
    • K. Yue and K. Dill "Folding proteins with a simple energy functions and extensive conformational searching" Protein Science 1996 5:254-261
    • Kolinski A; Skolnick J. "Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme." Proteins, 1994 Apr, 18(4):338-52
    • Kolinski A; Skolnick J. "Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin." Proteins, 1994 Apr, 18(4):353-66.
    • Thomas Dandekar & Patrick Argos "Identifying the tertiary fold of small proteins with different topologies from sequence and secondary structure using the genetic algorithm and extended criteria for strand regions." J. Mol. Biol.1996256:645-680