Assignments for week 5

Protein Folding

Usefull Links For This Week

The course 96 list of links. This is the set of links that was found before the course.
Added links during the course. If you find an interesting link please add it here.

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Practical Reports

Find some databases that have aligned protein structures. (Scop, FSSP or others). Describe the different databases you found.

In what category/fold/class etc are the following protein classifies to be in. And what are the other members of that class. Use atleast two databases.

Describe the Different (first)layers used to classify protein folds in SCOP.

Describe the Different (first)layers used to classify protein folds in FSSP. How is it different from SCOP ?

To understand before the reading seminars.

Describe some different methods used to structurally classify proteins.

Describe some of the questions that you can ask with very simple models of protein folding, (and give some answers)

Describe some of the methods used when trying to fold protein simulations.

Tell me what you think about the different folding approaches for trying to predict protein structures.

evaluation form