Publications from the Elofsson lab

Number of publications: 174
Number of citations: 4338
H-factor: 34
i10-index: 48
Average Impact Factor: 5.30

2025 1 Elofsson, A. (2025) Unlocking protein networks with Predictomes: The SPOC advantage. Mol Cell 85 (6) : 1050-1051. Cited times , Impact Factor: 13.156   Link   PubMed 2 Osterholz, H., Stevens, A., Abramsson, M.L., Lama, D., Brackmann, K., Rising, A., Elofsson, A., Marklund, E.G., Deindl, S., Leppert, A. and Landreh, M. (2025) Native Mass Spectrometry Captures the Conformational Plasticity of Proteins with Low-Complexity Domains. JACS Au 5 (1) : 281-290. Cited 0 times , Impact Factor: 0   Link   PubMed 3 Bogdanow, B., Ruwolt, M., Ruta, J., Muhlberg, L., Wang, C., Zeng, W.F., Elofsson, A. and Liu, F. (2025) Redesigning error control in cross-linking mass spectrometry enables more robust and sensitive protein-protein interaction studies. Mol Syst Biol 21 (1) : 90-106. Cited 0 times , Impact Factor: 9.954   Link   PubMed 2023 4 Bryant, P. and Elofsson, A. (2023) Peptide binder design with inverse folding and protein structure prediction. Commun Chem 6 (1) : 229. Cited 12 times , Impact Factor: 0   Link   PubMed 5 Ernits, K., Saha, C.K., Brodiazhenko, T., Chouhan, B., Shenoy, A., Buttress, J.A., Duque-Pedraza, J.J., Bojar, V., Nakamoto, J.A., Kurata, T., Egorov, A.A., Shyrokova, L., Johansson, M.J.O., Mets, T., Rustamova, A., Dzigurski, J., Tenson, T., Garcia-Pino, A., Strahl, H., Elofsson, A., Hauryliuk, V. and Atkinson, G.C. (2023) The structural basis of hyperpromiscuity in a core combinatorial network of type II toxin-antitoxin and related phage defense systems. Proc Natl Acad Sci U S A 120 (33) : e2305393120. Cited 23 times , Impact Factor: 9.598   Link   PubMed 6 Dahl, L., Kotliar, I.B., Bendes, A., Dodig-Crnkovic, T., Fromm, S., Elofsson, A., Uhlen, M., Sakmar, T.P. and Schwenk, J.M. (2023) Multiplexed selectivity screening of anti-GPCR antibodies. Sci Adv 9 (18) : eadf9297. Cited 15 times , Impact Factor: 0   Link   PubMed 7 Kahle, M., Appelgren, S., Elofsson, A., Carroni, M. and Adelroth, P. (2023) Insights into the structure-function relationship of the NorQ/NorD chaperones from Paracoccus denitrificans reveal shared principles of interacting MoxR AAA+/VWA domain proteins. BMC Biol 21 (1) : 47. Cited 4 times , Impact Factor: 5.059   Link   PubMed 8 Saluri, M., Leppert, A., Gese, G.V., Sahin, C., Lama, D., Kaldmae, M., Chen, G., Elofsson, A., Allison, T.M., Arsenian-Henriksson, M., Johansson, J., Lane, D.P., Hallberg, B.M. and Landreh, M. (2023) A "grappling hook" interaction connects self-assembly and chaperone activity of Nucleophosmin 1. PNAS Nexus 2 (2) : pgac303. Cited 10 times , Impact Factor: 9.598   Link   PubMed 9 Burke, D.F., Bryant, P., Barrio-Hernandez, I., Memon, D., Pozzati, G., Shenoy, A., Zhu, W., Dunham, A.S., Albanese, P., Keller, A., Scheltema, R.A., Bruce, J.E., Leitner, A., Kundrotas, P., Beltrao, P. and Elofsson, A. (2023) Towards a structurally resolved human protein interaction network. Nat Struct Mol Biol 30 (2) : 216-225. Cited 189 times , Impact Factor: 11.085   Link   PubMed 2022 10 Bryant, P., Pozzati, G., Zhu, W., Shenoy, A., Kundrotas, P. and Elofsson, A. (2022) Predicting the structure of large protein complexes using AlphaFold and Monte Carlo tree search. Nat Commun 13 (1) : 6028. Cited 172 times , Impact Factor: 14.92   Link   PubMed 11 Osterlund, N., Vosselman, T., Leppert, A., Graslund, A., Jornvall, H., Ilag, L.L., Marklund, E.G., Elofsson, A., Johansson, J., Sahin, C. and Landreh, M. (2022) Mass Spectrometry and Machine Learning Reveal Determinants of Client Recognition by Antiamyloid Chaperones. Mol Cell Proteomics 21 (10) : 100413. Cited 9 times , Impact Factor: 13.156   Link   PubMed 12 Allison, T.M., Degiacomi, M.T., Marklund, E.G., Jovine, L., Elofsson, A., Benesch, J.L.P. and Landreh, M. (2022) Complementing machine learning-based structure predictions with native mass spectrometry. Protein Sci 31 (6) : e4333. Cited 17 times , Impact Factor: 3.135   Link   PubMed 13 Bryant, P., Pozzati, G. and Elofsson, A. (2022) Author Correction: Improved prediction of protein-protein interactions using AlphaFold2. Nat Commun 13 (1) : 1694. Cited 0 times , Impact Factor: 14.92   Link   PubMed 14 Bryant, P., Pozzati, G. and Elofsson, A. (2022) Improved prediction of protein-protein interactions using AlphaFold2. Nat Commun 13 (1) : 1265. Cited 792 times , Impact Factor: 14.92   Link   PubMed 15 Pozzati, G., Kundrotas, P. and Elofsson, A. (2022) Scoring of protein-protein docking models utilizing predicted interface residues. Proteins 90 (7) : 1493-1505. Cited 6 times , Impact Factor: 3.354   Link   PubMed 16 Bryant, P. and Elofsson, A. (2022) The relationship between ageing and changes in the human blood and brain methylomes. NAR Genom Bioinform 4 (1) : lqac001. Cited 3 times , Impact Factor: 1   Link   PubMed 17 Duart, G., Lamb, J., Ortiz-Mateu, J., Elofsson, A. and Mingarro, I. (2022) Intra-Helical Salt Bridge Contribution to Membrane Protein Insertion. J Mol Biol 434 (5) : 167467. Cited 9 times , Impact Factor: 5.501   Link   PubMed 18 Quaglia, F., Meszaros, B., Salladini, E., Hatos, A., Pancsa, R., Chemes, L.B., Pajkos, M., Lazar, T., Pena-Diaz, S., Santos, J., Acs, V., Farahi, N., Ficho, E., Aspromonte, M.C., Bassot, C., Chasapi, A., Davey, N.E., Davidovic, R., Dobson, L., Elofsson, A., Erdos, G., Gaudet, P., Giglio, M., Glavina, J., Iserte, J., Iglesias, V., Kalman, Z., Lambrughi, M., Leonardi, E., Longhi, S., Macedo-Ribeiro, S., Maiani, E., Marchetti, J., Marino-Buslje, C., Meszaros, A., Monzon, A.M., Minervini, G., Nadendla, S., Nilsson, J.F., Novotny, M., Ouzounis, C.A., Palopoli, N., Papaleo, E., Pereira, P.J.B., Pozzati, G., Promponas, V.J., Pujols, J., Rocha, A.C.S., Salas, M., Sawicki, L.R., Schad, E., Shenoy, A., Szaniszlo, T., Tsirigos, K.D., Veljkovic, N., Parisi, G., Ventura, S., Dosztanyi, Z., Tompa, P., Tosatto, S.C.E. and Piovesan, D. (2022) DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res 50 (D1) : D480-D487. Cited 154 times , Impact Factor: 6.954   Link   PubMed 2021 19 Elofsson, A. (2021) Toward Characterising the Cellular 3D-Proteome. Front Bioinform 1: 598878. Cited 5 times , Impact Factor: 0   Link   PubMed 20 Laine, E., Eismann, S., Elofsson, A. and Grudinin, S. (2021) Protein sequence-to-structure learning: Is this the end(-to-end revolution)? Proteins 89 (12) : 1770-1786. Cited 42 times , Impact Factor: 3.354   Link   PubMed 21 Sudha, G., Bassot, C., Lamb, J., Shu, N., Huang, Y. and Elofsson, A. (2021) The evolutionary history of topological variations in the CPA/AT transporters. PLoS Comput Biol 17 (8) : e1009278. Cited 3 times , Impact Factor: 6.236   Link   PubMed 22 Li, Z., Jiang, K., Qin, S., Zhong, Y. and Elofsson, A. (2021) GCSENet: A GCN, CNN and SENet ensemble model for microRNA-disease association prediction. PLoS Comput Biol 17 (6) : e1009048. Cited 22 times , Impact Factor: 6.236   Link   PubMed 23 Baldassarre, F., Menendez Hurtado, D., Elofsson, A. and Azizpour, H. (2021) GraphQA: protein model quality assessment using graph convolutional networks. Bioinformatics 37 (3) : 360-366. Cited 124 times , Impact Factor: 5.039   Link   PubMed 2020 24 Bryant, P. and Elofsson, A. (2020) Estimating the impact of mobility patterns on COVID-19 infection rates in 11 European countries. PeerJ 8: e9879. Cited 66 times , Impact Factor: 2.984   Link   PubMed 25 Bryant, P. and Elofsson, A. (2020) Decomposing Structural Response Due to Sequence Changes in Protein Domains with Machine Learning. J Mol Biol 432 (16) : 4435-4446. Cited 2 times , Impact Factor: 5.501   Link   PubMed 26 Li, Z., Lin, Y., Elofsson, A. and Yao, Y. (2020) Protein Contact Map Prediction Based on ResNet and DenseNet. Biomed Res Int 2020: 7584968. Cited 40 times , Impact Factor: 1   Link   PubMed 27 Hatos, A., Hajdu-Soltesz, B., Monzon, A.M., Palopoli, N., Alvarez, L., Aykac-Fas, B., Bassot, C., Benitez, G.I., Bevilacqua, M., Chasapi, A., Chemes, L., Davey, N.E., Davidovic, R., Dunker, A.K., Elofsson, A., Gobeill, J., Foutel, N.S.G., Sudha, G., Guharoy, M., Horvath, T., Iglesias, V., Kajava, A.V., Kovacs, O.P., Lamb, J., Lambrughi, M., Lazar, T., Leclercq, J.Y., Leonardi, E., Macedo-Ribeiro, S., Macossay-Castillo, M., Maiani, E., Manso, J.A., Marino-Buslje, C., Martinez-Perez, E., Meszaros, B., Micetic, I., Minervini, G., Murvai, N., Necci, M., Ouzounis, C.A., Pajkos, M., Paladin, L., Pancsa, R., Papaleo, E., Parisi, G., Pasche, E., Barbosa Pereira, P.J., Promponas, V.J., Pujols, J., Quaglia, F., Ruch, P., Salvatore, M., Schad, E., Szabo, B., Szaniszlo, T., Tamana, S., Tantos, A., Veljkovic, N., Ventura, S., Vranken, W., Dosztanyi, Z., Tompa, P., Tosatto, S.C.E. and Piovesan, D. (2020) DisProt: intrinsic protein disorder annotation in 2020. Nucleic Acids Res 48 (D1) : D269-D276. Cited 261 times , Impact Factor: 6.954   Link   PubMed 2019 28 Ndi, M., Masuyer, G., Dawitz, H., Carlstrom, A., Michel, M., Elofsson, A., Rapp, M., Stenmark, P. and Ott, M. (2019) Structural basis for the interaction of the chaperone Cbp3 with newly synthesized cytochrome b during mitochondrial respiratory chain assembly. J Biol Chem 294 (45) : 16663-16671. Cited 10 times , Impact Factor: 5.581   Link   PubMed 29 Basile, W., Salvatore, M., Bassot, C. and Elofsson, A. (2019) Why do eukaryotic proteins contain more intrinsically disordered regions? PLoS Comput Biol 15 (7) : e1007186. Cited 101 times , Impact Factor: 6.236   Link   PubMed 30 Cheng, J., Choe, M.H., Elofsson, A., Han, K.S., Hou, J., Maghrabi, A.H.A., McGuffin, L.J., Menendez-Hurtado, D., Olechnovic, K., Schwede, T., Studer, G., Uziela, K., Venclovas, C. and Wallner, B. (2019) Estimation of model accuracy in CASP13. Proteins 87 (12) : 1361-1377. Cited 98 times , Impact Factor: 3.354   Link   PubMed 31 Bassot, C., Menendez Hurtado, D. and Elofsson, A. (2019) Using PconsC4 and PconsFold2 to Predict Protein Structure. Curr Protoc Bioinformatics 66 (1) : e75. Cited 7 times , Impact Factor: 0   Link   PubMed 32 Lamb, J., Jarmolinska, A.I., Michel, M., Menendez-Hurtado, D., Sulkowska, J.I. and Elofsson, A. (2019) PconsFam: An Interactive Database of Structure Predictions of Pfam Families. J Mol Biol 431 (13) : 2442-2448. Cited 16 times , Impact Factor: 5.501   Link   PubMed 33 Elofsson, A., Hess, B., Lindahl, E., Onufriev, A., van der Spoel, D. and Wallqvist, A. (2019) Ten simple rules on how to create open access and reproducible molecular simulations of biological systems. PLoS Comput Biol 15 (1) : e1006649. Cited 39 times , Impact Factor: 6.236   Link   PubMed 34 Michel, M., Menendez Hurtado, D. and Elofsson, A. (2019) PconsC4: fast, accurate and hassle-free contact predictions. Bioinformatics 35 (15) : 2677-2679. Cited 88 times , Impact Factor: 5.039   Link   PubMed 2018 35 Uziela, K., Menendez Hurtado, D., Shu, N., Wallner, B. and Elofsson, A. (2018) Improved protein model quality assessments by changing the target function. Proteins 86 (6) : 654-663. Cited 21 times , Impact Factor: 3.354   Link   PubMed 36 Tsirigos, K.D., Govindarajan, S., Bassot, C., Vastermark, A., Lamb, J., Shu, N. and Elofsson, A. (2018) Topology of membrane proteins-predictions, limitations and variations. Curr Opin Struct Biol 50: 9-17. Cited 38 times , Impact Factor: 10.15   Link   PubMed 37 Elofsson, A., Joo, K., Keasar, C., Lee, J., Maghrabi, A.H.A., Manavalan, B., McGuffin, L.J., Menendez Hurtado, D., Mirabello, C., Pilstal, R., Sidi, T., Uziela, K. and Wallner, B. (2018) Methods for estimation of model accuracy in CASP12. Proteins 86 Suppl 1: 361-373. Cited 34 times , Impact Factor: 3.354   Link   PubMed 38 Salvatore, M., Shu, N. and Elofsson, A. (2018) The SubCons webserver: A user friendly web interface for state-of-the-art subcellular localization prediction. Protein Sci 27 (1) : 195-201. Cited 17 times , Impact Factor: 3.135   Link   PubMed 2017 39 Michel, M., Menendez Hurtado, D., Uziela, K. and Elofsson, A. (2017) Large-scale structure prediction by improved contact predictions and model quality assessment. Bioinformatics 33 (14) : i23-i29. Cited 37 times , Impact Factor: 5.039   Link   PubMed 40 Michel, M., Skwark, M.J., Menendez Hurtado, D., Ekeberg, M. and Elofsson, A. (2017) Predicting accurate contacts in thousands of Pfam domain families using PconsC3. Bioinformatics 33 (18) : 2859-2866. Cited 47 times , Impact Factor: 5.039   Link   PubMed 41 Salvatore, M., Warholm, P., Shu, N., Basile, W. and Elofsson, A. (2017) SubCons: a new ensemble method for improved human subcellular localization predictions. Bioinformatics 33 (16) : 2464-2470. Cited 35 times , Impact Factor: 5.039   Link   PubMed 42 Basile, W., Sachenkova, O., Light, S. and Elofsson, A. (2017) High GC content causes orphan proteins to be intrinsically disordered. PLoS Comput Biol 13 (3) : e1005375. Cited 73 times , Impact Factor: 6.236   Link   PubMed 43 Dimou, N.L., Tsirigos, K.D., Elofsson, A. and Bagos, P.G. (2017) GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinformatics 33 (10) : 1521-1527. Cited 14 times , Impact Factor: 5.039   Link   PubMed 44 Uziela, K., Menendez Hurtado, D., Shu, N., Wallner, B. and Elofsson, A. (2017) ProQ3D: improved model quality assessments using deep learning. Bioinformatics 33 (10) : 1578-1580. Cited 185 times , Impact Factor: 5.039   Link   PubMed 2016 45 Uziela, K., Shu, N., Wallner, B. and Elofsson, A. (2016) ProQ3: Improved model quality assessments using Rosetta energy terms. Sci Rep 6: 33509. Cited 115 times , Impact Factor: 0   Link   PubMed 46 Tsirigos, K.D., Elofsson, A. and Bagos, P.G. (2016) PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinformatics 32 (17) : i665-i671. Cited 89 times , Impact Factor: 5.039   Link   PubMed 47 Hayat, S., Peters, C., Shu, N., Tsirigos, K.D. and Elofsson, A. (2016) Inclusion of dyad-repeat pattern improves topology prediction of transmembrane beta-barrel proteins. Bioinformatics 32 (10) : 1571-1573. Cited 89 times , Impact Factor: 5.039   Link   PubMed 48 Peters, C., Tsirigos, K.D., Shu, N. and Elofsson, A. (2016) Improved topology prediction using the terminal hydrophobic helices rule. Bioinformatics 32 (8) : 1158-1162. Cited 62 times , Impact Factor: 5.039   Link   PubMed 2015 49 Shiota, T., Imai, K., Qiu, J., Hewitt, V.L., Tan, K., Shen, H.H., Sakiyama, N., Fukasawa, Y., Hayat, S., Kamiya, M., Elofsson, A., Tomii, K., Horton, P., Wiedemann, N., Pfanner, N., Lithgow, T. and Endo, T. (2015) Molecular architecture of the active mitochondrial protein gate. Science 349 (6255) : 1544-1548. Cited 0 times , Impact Factor: 26.372   Link   PubMed 50 De Marothy, M.T. and Elofsson, A. (2015) Marginally hydrophobic transmembrane alpha-helices shaping membrane protein folding. Protein Sci 24 (7) : 1057-1074. Cited 0 times , Impact Factor: 3.135   Link   PubMed 51 Tsirigos, K.D., Peters, C., Shu, N., Kall, L. and Elofsson, A. (2015) The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. Nucleic Acids Res 43 (W1) : W401-7. Cited 0 times , Impact Factor: 6.954   Link   PubMed 52 Mirzadeh, K., Martinez, V., Toddo, S., Guntur, S., Herrgard, M.J., Elofsson, A., Norholm, M.H. and Daley, D.O. (2015) Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector-Coding Sequence Junction. ACS Synth Biol 4 (9) : 959-965. Cited 0 times , Impact Factor: 4.978   Link   PubMed 53 Hayat, S., Sander, C., Marks, D.S. and Elofsson, A. (2015) All-atom 3D structure prediction of transmembrane beta-barrel proteins from sequences. Proc Natl Acad Sci U S A 112 (17) : 5413-5418. Cited 0 times , Impact Factor: 9.598   Link   PubMed 2014 54 Skwark, M.J., Raimondi, D., Michel, M. and Elofsson, A. (2014) Improved contact predictions using the recognition of protein like contact patterns. PLoS Comput Biol 10 (11) : e1003889. Cited 189 times , Impact Factor: 6.236   Link   PubMed 55 Michel, M., Hayat, S., Skwark, M.J., Sander, C., Marks, D.S. and Elofsson, A. (2014) PconsFold: improved contact predictions improve protein models. Bioinformatics 30 (17) : i482-8. Cited 0 times , Impact Factor: 5.039   Link   PubMed 56 Light, S., Basile, W. and Elofsson, A. (2014) Orphans and new gene origination, a structural and evolutionary perspective. Curr Opin Struct Biol 26: 73-83. Cited 0 times , Impact Factor: 10.15   Link   PubMed 57 Virkki, M.T., Peters, C., Nilsson, D., Sorensen, T., Cristobal, S., Wallner, B. and Elofsson, A. (2014) The positive inside rule is stronger when followed by a transmembrane helix. J Mol Biol 426 (16) : 2982-2991. Cited 0 times , Impact Factor: 5.501   Link   PubMed 58 Virkki, M., Boekel, C., Illergard, K., Peters, C., Shu, N., Tsirigos, K.D., Elofsson, A., von Heijne, G. and Nilsson, I. (2014) Large tilts in transmembrane helices can be induced during tertiary structure formation. J Mol Biol 426 (13) : 2529-2538. Cited 0 times , Impact Factor: 5.501   Link   PubMed 59 Virkki, M.T., Agrawal, N., Edsbacker, E., Cristobal, S., Elofsson, A. and Kauko, A. (2014) Folding of Aquaporin 1: multiple evidence that helix 3 can shift out of the membrane core. Protein Sci 23 (7) : 981-992. Cited 0 times , Impact Factor: 3.135   Link   PubMed 60 Peters, C. and Elofsson, A. (2014) Why is the biological hydrophobicity scale more accurate than earlier experimental hydrophobicity scales? Proteins 82 (9) : 2190-2198. Cited 0 times , Impact Factor: 3.354   Link   PubMed 2013 61 Light, S., Sagit, R., Sachenkova, O., Ekman, D. and Elofsson, A. (2013) Protein expansion is primarily due to indels in intrinsically disordered regions. Mol Biol Evol 30 (12) : 2645-2653. Cited 95 times , Impact Factor: 10.353   Link   PubMed 62 Skwark, M.J. and Elofsson, A. (2013) PconsD: ultra rapid, accurate model quality assessment for protein structure prediction. Bioinformatics 29 (14) : 1817-1818. Cited 36 times , Impact Factor: 5.039   Link   PubMed 63 Skwark, M.J., Abdel-Rehim, A. and Elofsson, A. (2013) PconsC: combination of direct information methods and alignments improves contact prediction. Bioinformatics 29 (14) : 1815-1816. Cited 102 times , Impact Factor: 5.039   Link   PubMed 64 Light, S. and Elofsson, A. (2013) The impact of splicing on protein domain architecture. Curr Opin Struct Biol 23 (3) : 451-458. Cited 50 times , Impact Factor: 10.15   Link   PubMed 65 Bendz, M., Skwark, M., Nilsson, D., Granholm, V., Cristobal, S., Kall, L. and Elofsson, A. (2013) Membrane protein shaving with thermolysin can be used to evaluate topology predictors. Proteomics 13 (9) : 1467-1480. Cited 15 times , Impact Factor: 5.479   Link   PubMed 66 Light, S., Sagit, R., Ekman, D. and Elofsson, A. (2013) Long indels are disordered: A study of disorder and indels in homologous eukaryotic proteins. Biochim Biophys Acta 1834 (5) : 890-897. Cited 42 times , Impact Factor: 2.59   Link   PubMed 67 Jurkowski, W., Yazdi, S. and Elofsson, A. (2013) Ligand binding properties of human galanin receptors. Mol Membr Biol 30 (2) : 206-216. Cited 24 times , Impact Factor: 3.87   Link   PubMed 68 Bano-Polo, M., Martinez-Gil, L., Wallner, B., Nieva, J.L., Elofsson, A. and Mingarro, I. (2013) Charge pair interactions in transmembrane helices and turn propensity of the connecting sequence promote helical hairpin insertion. J Mol Biol 425 (4) : 830-840. Cited 37 times , Impact Factor: 5.501   Link   PubMed 69 Imai, K., Hayat, S., Sakiyama, N., Fujita, N., Tomii, K., Elofsson, A. and Horton, P. (2013) Localization prediction and structure-based in silico analysis of bacterial proteins: with emphasis on outer membrane proteins. Methods Mol Biol 939: 115-140. Cited 6 times , Impact Factor: 3.667   Link   PubMed 2012 70 Hayat, S. and Elofsson, A. (2012) Ranking models of transmembrane beta-barrel proteins using Z-coordinate predictions. Bioinformatics 28 (12) : i90-6. Cited 0 times , Impact Factor: 5.039   Link   PubMed 71 Tsirigos, K.D., Hennerdal, A., Kall, L. and Elofsson, A. (2012) A guideline to proteome-wide alpha-helical membrane protein topology predictions. Proteomics 12 (14) : 2282-2294. Cited 0 times , Impact Factor: 5.479   Link   PubMed 72 Liberles, D.A., Teichmann, S.A., Bahar, I., Bastolla, U., Bloom, J., Bornberg-Bauer, E., Colwell, L.J., de Koning, A.P., Dokholyan, N.V., Echave, J., Elofsson, A., Gerloff, D.L., Goldstein, R.A., Grahnen, J.A., Holder, M.T., Lakner, C., Lartillot, N., Lovell, S.C., Naylor, G., Perica, T., Pollock, D.D., Pupko, T., Regan, L., Roger, A., Rubinstein, N., Shakhnovich, E., Sjolander, K., Sunyaev, S., Teufel, A.I., Thorne, J.L., Thornton, J.W., Weinreich, D.M. and Whelan, S. (2012) The interface of protein structure, protein biophysics, and molecular evolution. Protein Sci 21 (6) : 769-785. Cited 0 times , Impact Factor: 3.135   Link   PubMed 73 Light, S., Sagit, R., Ithychanda, S.S., Qin, J. and Elofsson, A. (2012) The evolution of filamin-a protein domain repeat perspective. J Struct Biol 179 (3) : 289-298. Cited 0 times , Impact Factor: 2.986   Link   PubMed 74 Hayat, S. and Elofsson, A. (2012) BOCTOPUS: improved topology prediction of transmembrane beta barrel proteins. Bioinformatics 28 (4) : 516-522. Cited 0 times , Impact Factor: 5.039   Link   PubMed 75 Contreras, F.X., Ernst, A.M., Haberkant, P., Bjorkholm, P., Lindahl, E., Gonen, B., Tischer, C., Elofsson, A., von Heijne, G., Thiele, C., Pepperkok, R., Wieland, F. and Brugger, B. (2012) Molecular recognition of a single sphingolipid species by a protein's transmembrane domain. Nature 481 (7382) : 525-529. Cited 401 times , Impact Factor: 28.751   Link   PubMed 76 Norholm, M.H., Light, S., Virkki, M.T., Elofsson, A., von Heijne, G. and Daley, D.O. (2012) Manipulating the genetic code for membrane protein production: what have we learnt so far? Biochim Biophys Acta 1818 (4) : 1091-1096. Cited 0 times , Impact Factor: 2.59   Link   PubMed 2011 77 Hedin, L.E., Illergard, K. and Elofsson, A. (2011) An introduction to membrane proteins. J Proteome Res 10 (8) : 3324-3331. Cited 19 times , Impact Factor: 5.675   Link   PubMed 78 Basmarke-Wehelie, R., Sjolinder, H., Jurkowski, W., Elofsson, A., Arnqvist, A., Engstrand, L., Hagner, M., Wallin, E., Guan, N., Kuranasekera, H., Aro, H. and Jonsson, A.B. (2011) The Complement Regulator CD46 Is Bactericidal to Helicobacter pylori and Blocks Urease Activity. Gastroenterology 141 (3) : 918-928. Cited 0 times , Impact Factor: 12.182   Link   PubMed 79 Shu, N. and Elofsson, A. (2011) KalignP: improved multiple sequence alignments using position specific gap penalties in Kalign2. Bioinformatics 27 (12) : 1702-1703. Cited 0 times , Impact Factor: 5.039   Link   PubMed 80 Hennerdal, A. and Elofsson, A. (2011) Rapid membrane protein topology prediction. Bioinformatics 27 (9) : 1322-1323. Cited 0 times , Impact Factor: 5.039   Link   PubMed 81 Larsson, P., Skwark, M.J., Wallner, B. and Elofsson, A. (2011) Improved predictions by Pcons.net using multiple templates. Bioinformatics 27 (3) : 426-427. Cited 0 times , Impact Factor: 5.039   Link   PubMed 82 Illergard, K., Kauko, A. and Elofsson, A. (2011) Why are polar residues within the membrane core evolutionary conserved? Proteins 79 (1) : 79-91. Cited 0 times , Impact Factor: 3.354   Link   PubMed 2010 83 Lima, M.F., Eloy, N.B., Pegoraro, C., Sagit, R., Rojas, C., Bretz, T., Vargas, L., Elofsson, A., Oliveira, A.C., Hemerly, A.S. and Ferreira, P.C. (2010) Genomic evolution and complexity of the Anaphase-promoting Complex (APC) in land plants. BMC Plant Biol 10 (1) : 254. Cited 0 times , Impact Factor: 3.232   Link   PubMed 84 Hennerdal, A., Falk, J., Lindahl, E. and Elofsson, A. (2010) Internal duplications in alpha-helical membrane protein topologies are common but the nonduplicated forms are rare. Protein Sci 19 (12) : 2305-2318. Cited 0 times , Impact Factor: 3.135   Link   PubMed 85 Runesson, J., Sollenberg, U.E., Jurkowski, W., Yazdi, S., Eriksson, E.E., Elofsson, A. and Langel, U. (2010) Determining receptor-ligand interaction of human galanin receptor type 3. Neurochem Int 57 (7) : 804-811. Cited 0 times , Impact Factor: 2.175   Link   PubMed 86 Bjorklund, A.K., Light, S., Sagit, R. and Elofsson, A. (2010) Nebulin: A Study of Protein Repeat Evolution. J Mol Biol 402 (1) : 38-51. Cited 0 times , Impact Factor: 5.501   Link   PubMed 87 Illergard, K., Callegari, S. and Elofsson, A. (2010) MPRAP: An accessibility predictor for alpha-helical transmembrane proteins that performs well inside and outside the membrane. BMC Bioinformatics 11 (1) : 333. Cited 0 times , Impact Factor: 3.493   Link   PubMed 88 Kauko, A., Hedin, L.E., Thebaud, E., Cristobal, S., Elofsson, A. and von Heijne, G. (2010) Repositioning of Transmembrane alpha-Helices during Membrane Protein Folding. J Mol Biol 397 (1) : 190-201. Cited 0 times , Impact Factor: 5.501   Link   PubMed 89 Ekman, D. and Elofsson, A. (2010) Identifying and Quantifying Orphan Protein Sequences in Fungi. J Mol Biol 396 (2) : 396-405. Cited 0 times , Impact Factor: 5.501   Link   PubMed 90 Hedin, L.E., Ojemalm, K., Bernsel, A., Hennerdal, A., Illergard, K., Enquist, K., Kauko, A., Cristobal, S., von Heijne, G., Lerch-Bader, M., Nilsson, I. and Elofsson, A. (2010) Membrane Insertion of Marginally Hydrophobic Transmembrane Helices Depends on Sequence Context. J Mol Biol 396 (1) : 221-229. Cited 0 times , Impact Factor: 5.501   Link   PubMed 2009 91 Larsson, P., Skwark, M.J., Wallner, B. and Elofsson, A. (2009) Assessment of global and local model quality in CASP8 using Pcons and ProQ. Proteins 77 (S9) : 167-172. Cited 0 times , Impact Factor: 3.354   Link   PubMed 92 Illergard, K., Ardell, D.H. and Elofsson, A. (2009) Structure is three to ten times more conserved than sequence-A study of structural response in protein cores. Proteins 77 (3) : 499-508. Cited 0 times , Impact Factor: 3.354   Link   PubMed 93 Michino, M., Abola, E., Brooks, 3rd, C.L., Dixon, J.S., Moult, J. and Stevens, R.C. (2009) Community-wide assessment of GPCR structure modelling and ligand docking: GPCR Dock 2008. Nat Rev Drug Discov 8 (6) : 455-463. Cited 0 times , Impact Factor: 23.308   Link   PubMed 94 Bernsel, A., Viklund, H., Hennerdal, A. and Elofsson, A. (2009) TOPCONS: consensus prediction of membrane protein topology. Nucleic Acids Res 37 (Web Server issue) : W465-8. Cited 0 times , Impact Factor: 6.954   Link   PubMed 2008 95 Viklund, H., Bernsel, A., Skwark, M. and Elofsson, A. (2008) SPOCTOPUS: a combined predictor of signal peptides and membrane protein topology. Bioinformatics 24 (24) : 2928-2929. Cited 0 times , Impact Factor: 5.039   Link   PubMed 96 Bjorklund, A.K., Light, S., Hedin, L. and Elofsson, A. (2008) Quantitative assessment of the structural bias in protein-protein interaction assays. Proteomics 8 (22) : 4657-4667. Cited 0 times , Impact Factor: 5.479   Link   PubMed 97 Moore, A.D., Bjorklund, A.K., Ekman, D., Bornberg-Bauer, E. and Elofsson, A. (2008) Arrangements in the modular evolution of proteins. Trends Biochem Sci 33 (9) : 444-451. Cited 0 times , Impact Factor: 14.994   Link   PubMed 98 Kauko, A., Illergard, K. and Elofsson, A. (2008) Coils in the membrane core are conserved and functionally important. J Mol Biol 380 (1) : 170-180. Cited 0 times , Impact Factor: 5.501   Link   PubMed 99 Bernsel, A., Viklund, H., Falk, J., Lindahl, E., von Heijne, G. and Elofsson, A. (2008) Prediction of membrane-protein topology from first principles. Proc Natl Acad Sci U S A 105 (20) : 7177-7181. Cited 0 times , Impact Factor: 9.598   Link   PubMed 100 Viklund, H. and Elofsson, A. (2008) OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar. Bioinformatics 24 (15) : 1662-1668. Cited 0 times , Impact Factor: 5.039   Link   PubMed 101 Larsson, P., Wallner, B., Lindahl, E. and Elofsson, A. (2008) Using multiple templates to improve quality of homology models in automated homology modeling. Protein Sci 17 (6) : 990-1002. Cited 0 times , Impact Factor: 3.135   Link   PubMed 102 Papaloukas, C., Granseth, E., Viklund, H. and Elofsson, A. (2008) Estimating the length of transmembrane helices using Z-coordinate predictions. Protein Sci 17 (2) : 271-278. Cited 0 times , Impact Factor: 3.135   Link   PubMed 103 Bernsel, A., Viklund, H. and Elofsson, A. (2008) Remote homology detection of integral membrane proteins using conserved sequence features. Proteins 71 (3) : 1387-1399. Cited 0 times , Impact Factor: 3.354   Link   PubMed 104 Wallner, B., and Elofsson, A. (2008) Prediction of global and local model qualities using MQAPs Eds Bujnicki 1: 1-1. Cited 0 times , Impact Factor: 2.269   Link 2007 105 Wallner, B. and Elofsson, A. (2007) Prediction of global and local model quality in CASP7 using Pcons and ProQ. Proteins 69 (S8) : 184-193. Cited 0 times , Impact Factor: 3.354   Link   PubMed 106 Ekman, D., Bjorklund, A.K. and Elofsson, A. (2007) Quantification of the elevated rate of domain rearrangements in metazoa. J Mol Biol 372 (5) : 1337-1348. Cited 0 times , Impact Factor: 5.501   Link   PubMed 107 Wallner, B., Larsson, P. and Elofsson, A. (2007) Pcons.net: protein structure prediction meta server. Nucleic Acids Res 35 (suppl_2) : W369-W374. Cited 0 times , Impact Factor: 6.954   Link   PubMed 108 Elofsson, A. and von Heijne, G. (2007) Membrane protein structure: prediction versus reality. Annu Rev Biochem 76: 125-140. Cited 0 times , Impact Factor: 31.19   Link   PubMed 109 Hughes, T., Ekman, D., Ardawatia, H., Elofsson, A. and Liberles, D.A. (2007) Evaluating dosage compensation as a cause of duplicate gene retention in Paramecium tetraurelia. Genome Biol 8 (5) : 213. Cited 0 times , Impact Factor: 10.3   Link   PubMed 2006 110 Bjorklund, A.K., Ekman, D. and Elofsson, A. (2006) Expansion of Protein Domain Repeats. PLoS Comput Biol 2 (8) : e114. Cited 0 times , Impact Factor: 6.236   Link   PubMed 111 Granseth, E., Viklund, H. and Elofsson, A. (2006) ZPRED: predicting the distance to the membrane center for residues in alpha-helical membrane proteins. Bioinformatics 22 (14) : e191-6. Cited 0 times , Impact Factor: 5.039   Link   PubMed 112 Ohlson, T., Aggarwal, V., Elofsson, A. and MacCallum, R.M. (2006) Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps. BMC Bioinformatics 7: 357. Cited 0 times , Impact Factor: 3.493   Link   PubMed 113 Viklund, H., Granseth, E. and Elofsson, A. (2006) Structural classification and prediction of reentrant regions in alpha-helical transmembrane proteins: application to complete genomes. J Mol Biol 361 (3) : 591-603. Cited 0 times , Impact Factor: 5.501   Link   PubMed 114 Amico, M., Finelli, M., Rossi, I., Zauli, A., Elofsson, A., Viklund, H., von Heijne, G., Jones, D., Krogh, A., Fariselli, P., Luigi Martelli, P. and Casadio, R. (2006) PONGO: a web server for multiple predictions of all-alpha transmembrane proteins. Nucleic Acids Res 34 (Web Server issue) : W169-72. Cited 0 times , Impact Factor: 6.954   Link   PubMed 115 Ekman, D., Light, S., Bjorklund, A.K. and Elofsson, A. (2006) What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae? Genome Biol 7 (6) : R45. Cited 0 times , Impact Factor: 10.3   Link   PubMed 116 Wallner, B. and Elofsson, A. (2006) Identification of correct regions in protein models using structural, alignment, and consensus information. Protein Sci 15 (4) : 900-913. Cited 0 times , Impact Factor: 3.135   Link   PubMed 117 Asa Bjorklund, Anna Thoren, Gunnar von Heijne and Arne Elofsson (2006) The use of Phylogenetic profils for Gene Predictions Revisited Current Genomics 7 (2) : 79-86. Cited 0 times , Impact Factor: 0.573   Link 2005 118 Light, S., Kraulis, P. and Elofsson, A. (2005) Preferential attachment in the evolution of metabolic networks. BMC Genomics 6: 159. Cited 0 times , Impact Factor: 4.18   Link   PubMed 119 Ohlson, T. and Elofsson, A. (2005) ProfNet, a method to derive profile-profile alignment scoring functions that improves the alignments of distantly related proteins. BMC Bioinformatics 6: 253. Cited 0 times , Impact Factor: 3.493   Link   PubMed 120 Wallner, B. and Elofsson, A. (2005) Pcons5: combining consensus, structural evaluation and fold recognition scores. Bioinformatics 21 (23) : 4248-4254. Cited 0 times , Impact Factor: 5.039   Link   PubMed 121 Bjorklund, A.K., Ekman, D., Light, S., Frey-Skott, J. and Elofsson, A. (2005) Domain rearrangements in protein evolution. J Mol Biol 353 (4) : 911-923. Cited 0 times , Impact Factor: 5.501   Link   PubMed 122 Berglund, A.C., Wallner, B., Elofsson, A. and Liberles, D.A. (2005) Tertiary windowing to detect positive diversifying selection. J Mol Evol 60 (4) : 499-504. Cited 0 times , Impact Factor: 3.234   Link   PubMed 123 Wallner, B. and Elofsson, A. (2005) All are not equal: a benchmark of different homology modeling programs. Protein Sci 14 (5) : 1315-1327. Cited 0 times , Impact Factor: 3.135   Link   PubMed 124 Ekman, D., Bjorklund, A.K., Frey-Skott, J. and Elofsson, A. (2005) Multi-domain proteins in the three kingdoms of life: orphan domains and other unassigned regions. J Mol Biol 348 (1) : 231-243. Cited 0 times , Impact Factor: 5.501   Link   PubMed 125 Granseth, E., von Heijne, G. and Elofsson, A. (2005) A study of the membrane-water interface region of membrane proteins. J Mol Biol 346 (1) : 377-385. Cited 0 times , Impact Factor: 5.501   Link   PubMed 2004 126 Ohlson, T., Wallner, B. and Elofsson, A. (2004) Profile-profile methods provide improved fold-recognition: a study of different profile-profile alignment methods. Proteins 57 (1) : 188-197. Cited 0 times , Impact Factor: 3.354   Link   PubMed 127 Viklund, H. and Elofsson, A. (2004) Best alpha-helical transmembrane protein topology predictions are achieved using hidden Markov models and evolutionary information. Protein Sci 13 (7) : 1908-1917. Cited 0 times , Impact Factor: 3.135     PubMed 128 Wallner, B., Fang, H., Ohlson, T., Frey-Skott, J. and Elofsson, A. (2004) Using evolutionary information for the query and target improves fold recognition. Proteins 54 (2) : 342-350. Cited 0 times , Impact Factor: 3.354   Link   PubMed 2003 129 Rychlewski, L., Fischer, D. and Elofsson, A. (2003) LiveBench-6: large-scale automated evaluation of protein structure prediction servers. Proteins 53 Suppl 6: 542-547. Cited 0 times , Impact Factor: 3.354   Link   PubMed 130 Wallner, B., Fang, H. and Elofsson, A. (2003) Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller. Proteins 53 Suppl 6: 534-541. Cited 0 times , Impact Factor: 3.354   Link   PubMed 131 Fischer, D., Rychlewski, L., Dunbrack, Jr., R.L., Ortiz, A.R. and Elofsson, A. (2003) CAFASP3: the third critical assessment of fully automated structure prediction methods. Proteins 53 Suppl 6: 503-516. Cited 0 times , Impact Factor: 3.354   Link   PubMed 132 Emanuelsson, O., Elofsson, A., von Heijne, G. and Cristobal, S. (2003) In silico prediction of the peroxisomal proteome in fungi, plants and animals. J Mol Biol 330 (2) : 443-456. Cited 0 times , Impact Factor: 5.501     PubMed 133 Ginalski, K., Elofsson, A., Fischer, D. and Rychlewski, L. (2003) 3D-Jury: a simple approach to improve protein structure predictions. Bioinformatics 19 (8) : 1015-1018. Cited 0 times , Impact Factor: 5.039     PubMed 134 Wallner, B. and Elofsson, A. (2003) Can correct protein models be identified? Protein Sci 12 (5) : 1073-1086. Cited 0 times , Impact Factor: 3.135   Link   PubMed 2002 135 Donnes, P. and Elofsson, A. (2002) Prediction of MHC class I binding peptides, using SVMHC. BMC Bioinformatics 3: 25. Cited 0 times , Impact Factor: 3.493     PubMed 136 Milchert, L.E., Liberles, D.A. and Elofsson, A. (2002) The salmon genome (and other issues in bioinformatics). Genome Biol 3 (7) : REPORTS4022. Cited 0 times , Impact Factor: 10.3     PubMed 137 Hedman, M., Deloof, H., Von Heijne, G. and Elofsson, A. (2002) Improved detection of homologous membrane proteins by inclusion of information from topology predictions. Protein Sci 11 (3) : 652-658. Cited 0 times , Impact Factor: 3.135     PubMed 138 Elofsson, A. (2002) A study on protein sequence alignment quality. Proteins 46 (3) : 330-339. Cited 0 times , Impact Factor: 3.354     PubMed 139 David A. Liberles, Anna Thoren, Gunnar von Heijne and Arne Elofsson (2002) The use of Phylogenetic profils for Gene Predictions Current Genomics 3: 131-138. Cited 2 times , Impact Factor: 0.573   Link 2001 140 Bujnicki, J.M., Elofsson, A., Fischer, D. and Rychlewski, L. (2001) LiveBench-2: large-scale automated evaluation of protein structure prediction servers. Proteins Suppl 5: 184-191. Cited 0 times , Impact Factor: 3.354     PubMed 141 Fischer, D., Elofsson, A., Rychlewski, L., Pazos, F., Valencia, A., Rost, B., Ortiz, A.R. and Dunbrack, Jr., R.L. (2001) CAFASP2: the second critical assessment of fully automated structure prediction methods. Proteins Suppl 5: 171-183. Cited 113 times , Impact Factor: 3.354     PubMed 142 Lundstrom, J., Rychlewski, L., Bujnicki, J. and Elofsson, A. (2001) Pcons: a neural-network-based consensus predictor that improves fold recognition. Protein Sci 10 (11) : 2354-2362. Cited 0 times , Impact Factor: 3.135     PubMed 143 Cristobal, S., Zemla, A., Fischer, D., Rychlewski, L. and Elofsson, A. (2001) A study of quality measures for protein threading models. BMC Bioinformatics 2: 5. Cited 0 times , Impact Factor: 3.493     PubMed 144 Bujnicki, J.M., Elofsson, A., Fischer, D. and Rychlewski, L. (2001) Structure prediction meta server. Bioinformatics 17 (8) : 750-751. Cited 0 times , Impact Factor: 5.039     PubMed 145 Bujnicki, J.M., Elofsson, A., Fischer, D. and Rychlewski, L. (2001) LiveBench-1: continuous benchmarking of protein structure prediction servers. Protein Sci 10 (2) : 352-361. Cited 0 times , Impact Factor: 3.135     PubMed 146 Fang, H., Wallner, B. Lundström, J., von Wowern, C. and Elofsson, A. (2001) Improved fold recognition by using the Pcons consensus approach Chapter in “Protein structure prediction:Bioinformatic approach” IUL biotechnology Series, La Jolla, 1: 397-41. Cited 0 times , Impact Factor: 2.269   147 Eriksson, O., Xhou, Y. and Elofsson, A. (2001) Side chain-positioning as an integer programming problem. WABI 1: 1-1. Cited 0 times , Impact Factor: -1   Link 2000 148 Fischer, D., Elofsson, A. and Rychlewski, L. (2000) The 2000 Olympic Games of protein structure prediction; fully automated programs are being evaluated vis-a-vis human teams in the protein structure prediction experiment CAFASP2. Protein Eng 13 (10) : 667-670. Cited 0 times , Impact Factor: 2.662     PubMed 149 Siew, N., Elofsson, A., Rychlewski, L. and Fischer, D. (2000) MaxSub: an automated measure for the assessment of protein structure prediction quality. Bioinformatics 16 (9) : 776-785. Cited 0 times , Impact Factor: 5.039     PubMed 150 Lindahl, E. and Elofsson, A. (2000) Identification of related proteins on family, superfamily and fold level. J Mol Biol 295 (3) : 613-625. Cited 0 times , Impact Factor: 5.501     PubMed 1999 151 Garemyr, R. and Elofsson, A. (1999) Study of the electrostatics treatment in molecular dynamics simulations. Proteins 37 (3) : 417-428. Cited 0 times , Impact Factor: 3.354     PubMed 152 Monne, M., Nilsson, I., Elofsson, A. and von Heijne, G. (1999) Turns in transmembrane helices: determination of the minimal length of a "helical hairpin" and derivation of a fine-grained turn propensity scale. J Mol Biol 293 (4) : 807-814. Cited 0 times , Impact Factor: 5.501     PubMed 153 Fischer, D., Barret, C., Bryson, K., Elofsson, A., Godzik, A., Jones, D., Karplus, K.J., Kelley, L.A., MacCallum, R.M., Pawowski, K., Rost, B., Rychlewski, L. and Sternberg, M. (1999) CAFASP-1: critical assessment of fully automated structure prediction methods. Proteins Suppl 3: 209-217. Cited 0 times , Impact Factor: 3.354     PubMed 154 Elofsson, A. and Sonnhammer, E.L. (1999) A comparison of sequence and structure protein domain families as a basis for structural genomics. Bioinformatics 15 (6) : 480-500. Cited 0 times , Impact Factor: 5.039     PubMed 155 Hargbo, J. and Elofsson, A. (1999) Hidden Markov models that use predicted secondary structures for fold recognition. Proteins 36 (1) : 68-76. Cited 0 times , Impact Factor: 3.354     PubMed 156 Zhang, X.P., Elofsson, A., Andreu, D. and Glaser, E. (1999) Interaction of mitochondrial presequences with DnaK and mitochondrial hsp70. J Mol Biol 288 (1) : 177-190. Cited 0 times , Impact Factor: 5.501   Link   PubMed 1998 157 Seshadri, K., Garemyr, R., Wallin, E., von Heijne, G. and Elofsson, A. (1998) Architecture of beta-barrel membrane proteins: analysis of trimeric porins. Protein Sci 7 (9) : 2026-2032. Cited 0 times , Impact Factor: 3.135     PubMed 158 Zhang, X.-P., Elofsson, A. and Glaser, E. (1998) Interaction of mt-HSP70 with mitochondrial presequences Plant Mitochondria: From gene to Function (Moller, I.M., Gardeström, P., Glimelius, K. and Glaser, E., eds) 1: 1-1. Cited 0 times , Impact Factor: 2.269   Link 1997 159 Mingarro, I., Elofsson, A. and von Heijne, G. (1997) Helix-helix packing in a membrane-like environment. J Mol Biol 272 (4) : 633-641. Cited 0 times , Impact Factor: 5.501   Link   PubMed 160 Cserzo, M., Wallin, E., Simon, I., von Heijne, G. and Elofsson, A. (1997) Prediction of transmembrane alpha-helices in prokaryotic membrane proteins: the dense alignment surface method. Protein Eng 10 (6) : 673-676. Cited 0 times , Impact Factor: 2.662     PubMed 161 Wallin, E., Tsukihara, T., Yoshikawa, S., von Heijne, G. and Elofsson, A. (1997) Architecture of helix bundle membrane proteins: an analysis of cytochrome c oxidase from bovine mitochondria. Protein Sci 6 (4) : 808-815. Cited 0 times , Impact Factor: 3.135     PubMed 162 Elofsson, A (1997) Recent advances in how to test knowledge based energy functions for protein folding studies Recent Research Developments in Physical Chemistry 1: 1-1. Cited 0 times , Impact Factor: -1   Link 1996 163 Elofsson, A., Fischer, D., Rice, D.W., Le Grand, S.M. and Eisenberg, D. (1996) A study of combined structure/sequence profiles. Fold Des 1 (6) : 451-461. Cited 0 times , Impact Factor: -1     PubMed 164 Fischer, D, Elofsson, A and Rice, DW, LeGrand, S, Eisenberg, D (1996) Assessing the Performance of Fold Recognition Methods By Means of a Comprehensive Benchmark Proc. Pacific Symposium on Biocomputing, Hawaii, 100: 300-318. Cited 0 times , Impact Factor: 0   Link 165 Elofsson, A and Nilsson, L (1996) A 1.2 ns Molecular Dynamic Simulation of Ribonuclease T1-3-Guanosine monophosphate complex J Phys Chem 100: 2480-2488. Cited 4 times , Impact Factor: 3.265   Link 1995 166 Elofsson, A., Le Grand, S.M. and Eisenberg, D. (1995) Local moves: an efficient algorithm for simulation of protein folding Proteins 23 (1) : 73-82. Cited 0 times , Impact Factor: 3.354   Link 1994 167 LeGrand, S.M., Elofsson A. and Eisenberg, D. 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